Plant gene interaction network construction
WebAug 25, 2024 · Plant genetic engineering vectors, such as RNA interference (RNAi) and CRISPR/Cas9 vectors, are important tools for plant functional genomics. Efficient … WebJan 12, 2024 · RNA-seq data sets that met the following criteria were used for the construction of barley and sorghum GCNs ( van Dam et al. 2024 ): (i) that >70% of the reads survived after trimming; (ii) that >70% of the reads mapped to the barley or sorghum genomes uniquely; (iii) that they contain at least 10 million uniquely mapped reads.
Plant gene interaction network construction
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WebOct 2, 2024 · A gene regulatory network (GRN) is comprised of the regulatory elements which interact together to regulate the transcriptional and translational processes within the cell. GRNs involve the network of genes and proteins and molecular interactions that regulate those genes and proteins. GRNs govern the way a plant responds to various ... WebThis branch of research in the laboratory focuses on microbiome community structure and function in health and disease. We also study the bacteriophage that comprise the Virome …
WebTranscription factor (TF) has a significant influence on the state of a cell by regulating multiple down-stream genes. Thus, experimental and computational biologists have made great efforts to construct TF gene networks for regulatory interactions between TFs and their target genes. Now, an important research question is how to utilize TF networks to … WebAug 25, 2024 · Functional detections of plant ihpRNA constructs by the silencing of two marker genes ( GUS and GFP) and two endogenous genes ( NbPDS and OsPDS ). ( A – C) qRT-PCR and RT-PCR were performed to analyze the silencing effect of GUS, GFP, and NbPDS genes in tobacco leaves. NbActin was used as internal control.
WebApr 11, 2024 · A gene regulatory network (GRN) is composed of molecular regulators such as transcription factors (TFs) that bind to short, non-coding DNA sequences called cis -regulatory elements (CREs), which are typically located in … WebFeb 11, 2024 · A miRNA-gene interaction network was constructed, and hub miRNAs and genes were distinguished using Cytoscape software. Receiver operating characteristic (ROC) curves of hub miRNAs and genes were plotted, and correlations with hub genes and osteoporosis-associated factors were evaluated.
WebJan 30, 2007 · Genetic regulatory networks consist of a collection of genes, which are interconnected because one gene regulates the transcription of another directly or …
WebMay 18, 2011 · By using classical genetic screens, genes controlling this transition in seeds have been uncovered (1, 2), yet the means by which they interact to regulate germination remains largely unknown.In this work, this gap in our knowledge is addressed by predicting unique regulators of seed germination through the development of a transcriptional … inclined leg raisesWebFeb 6, 2024 · Our goal is to develop a comprehensive database of plant protein interaction sites that consists of multiple functional modules. It allows users to explore the associations between proteins from a systematic perspective and visualize protein complex structures and interaction sites. In the meantime, it also provides an online prediction platform. inclined leg liftsWebFeb 11, 2024 · A miRNA-gene interaction network was constructed, and hub miRNAs and genes were distinguished using Cytoscape software. Receiver operating characteristic … inclined lengthWebAug 12, 2024 · In recent years, synthetic microbial communities (SynComs) of varied complexity have been constructed using bottom-up combinations and have been applied … inclined letteringWebFunctional network construction in Arabidopsis using rule-based machine learning on large-scale data sets. The meta-analysis of large-scale postgenomics data sets within … inclined lendingWebJan 17, 2024 · The platform is composed of four main parts: Search, Tools, Statistics and Auxiliary. A total of 2 909 580 gene family members were identified from 138 plant species in PlantGF. The data can be queried in the Search section through a user-friendly interface. A general process for gene family analysis, having nine steps, is provided. inclined laptop standWebJan 7, 2024 · GeNeCK [197] is a web server that allows users to build GRNs from expression data using different network construction methods, including four partial correlation-based methods: GeneNet, NS, SPACE ... inclined lettering angle